Oatmeal Chocolate Chip Greek Yogurt Muffins made with whole wheat flour, oats and Greek yogurt in a healthier, hearty muffin that everyone will love!

A Muffin Obsession
My name is Maegan, and I’m obsessed with muffins! Banana muffins, chocolate chip muffins, blueberry muffins. ALL THE MUFFINS! They’re easy to bake, easy to serve, easy to eat and the varieties are endless. I can pretty much just open the fridge and pantry to find a few handy ingredients that would make tasty muffins in no time. And these Oatmeal Chocolate Chip Greek Yogurt Muffins are definitely worth obsessing over. They’re definitely one of my favorite muffin recipes. And they’re healthy-ish. That’s hard to beat!
Watch Me Make It!
Join me in the kitchen as I make these amazing Oatmeal Chocolate Chip Greek Yogurt Muffins!
Marvelous Muffins
We always have flavored or plain Greek yogurt on hand and I love baking with it because it adds great moisture and nutrition. I frequently use it in place of sour cream, mayonnaise, buttermilk and heavy cream in some recipes and you can hardly tell the difference. Today, I’m sharing a marvelous muffin that’s made healthier with whole wheat flour, oats, and a big cup full of Greek yogurt. They’ve got chocolate in them which makes them taste way more indulgent than they really are! I opt for semi-sweet chocolate, but dark chocolate chips would also be delicious.

Ingredients and Supplies
(see recipe card at the bottom of this post for measurements and details. To learn more about specific baking ingredients and how they function in baking recipes, reference my Complete Guide to Baking Ingredients)
Ingredients:
- Whole wheat flour: provides structure and fiber. Whole wheat flour adds a heartier texture and more nutritional value over all-purpose white flour. You can sub white whole wheat flour for a lighter texture.
- Old fashioned oats: add chewiness, nutty flavor, and a hearty texture to both the muffin and the streusel. They also help keep the muffins soft inside while crisping slightly on top. If you choose to use quick oats, keep in mind they have a softer texture and will cook more…quickly. So keep an eye on your oven and be ready to take your cookies out when they start to brown lightly at the edges.
- Baking powder: leavening agent that makes the muffins rise and stay fluffy.
- Baking soda: leavening agent that helps the muffins rise slightly and keeps them from being too dense.
- Kosher salt: balances the sweetness and sharpens the overall flavor. Table salt will actually pack a saltier punch than Kosher salt so if you only have table salt, adjust accordingly.
- Ground cinnamon: adds warmth and flavor that complements the banana and ginger so well.
- Canola oil: provides moisture and a soft texture with a neutral flavor that allows the other flavors to come through. Oil makes muffins more tender than melted butter.
- Dark brown sugar: adds moisture and chewiness due to the molasses content. If you use light brown sugar they won’t have as rich of a molasses flavor.
- Large eggs: bind ingredients, adds structure and aids in rising.
- Pure vanilla extract: enhances the overall flavor and brings out the warmth in the cinnamon.
- Vanilla flavored Greek yogurt: adds moisture, tang, and protein while helping with tenderness. You can use a whole milk or non-fat Greek yogurt. Plain Greek yogurt works great too!
- Chocolate chips: adds sweetness and a melty burst in both the muffin and the streusel. Use dark chocolate chips for a healthier antioxidant boost.
Supplies:

How to Make Oatmeal Chocolate Chip Greek Yogurt Muffins
- First, preheat oven to 350°F. Lightly grease a 12-cup muffin pan with cooking spray and set aside. Then, in a large bowl, whisk together the flour, oats, baking powder, baking soda, salt and cinnamon.
- In a medium bowl, whisk together the oil, brown sugar, eggs, vanilla extract and Greek yogurt. Stir the wet ingredients into the dry ingredients until the mixture is well combined. Fold in 1 cup chocolate chips.
- Divide batter evenly among greased muffin tins, filling each one almost full. In a small bowl, stir together the struesel ingredients with a fork until well coated in the oil.

- Place a heaping tablespoon of streusel over the batter in the muffin cups.

- Bake for 15-18 minutes or until muffins start to turn golden brown and streusel is crisp. Let muffins cool in pan for 5-10 minutes before removing to a wire rack to cool completely or enjoy.

Storage
Store leftovers in an airtight container at room temperature for up to three days or in the refrigerator for up to 5 days. Enjoy leftover banana muffins at room temperature or heat in the microwave for 10-15 seconds until warmed through.
To freeze, allow them to cool completely before wrapping individually in plastic wrap. Store in an airtight plastic container or plastic bag in the freezer for up to 3 months. Defrost frozen muffins in the refrigerator overnight or loosely covered at room temperature for a few hours.
More Muffins to Obsess Over
Naturally sweetened with maple syrup, these 5-Ingredient Flourless Banana Muffins are so delicious and moist, they’ll never miss what’s not in them. Flour-free, dairy-free and insanely tasty, you’ll feel great about serving them to your family! Make mornings magical with Blueberry Swirl Muffins that are tender with irresistible swirls of bold blueberry preserves all throughout. Mmmm-AZING! Nutella Swirled Banana Muffins are moist banana muffins with swirls of Nutella in every scrumptious bite!

More Marvelous Muffins
Sweet or savory, indulgent or healthy, discover your new favorite snack in my Marvelous Muffin Recipes!

If you make my Oatmeal Chocolate Chip Greek Yogurt Muffins, be sure to snap a picture and share it with me on Instagram @thebakermama so I can see. If you’re on Facebook, be sure to join my Friends of The BakerMama group to connect and share all the fun and yummy recipes of mine that you make! 😍 I just love seeing how inspired and creative y’all get with the ideas I share. Enjoy!
xoxo,

Oatmeal Chocolate Chip Greek Yogurt Muffins
- Prep Time: 15 mins
- Cook Time: 18 mins
- Total Time: 33 mins
- Yield: 12
- Category: Breakfast
Description
Oatmeal Chocolate Chip Greek Yogurt Muffins made with whole wheat flour, oats and Greek yogurt in a healthier hearty muffin that everyone will love!
Ingredients
Muffins:
- 1 cup whole wheat flour
- 1 and 1/2 cups old-fashioned oats
- 1 and 1/2 teaspoons baking powder
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 1 teaspoon cinnamon
- 1/4 cup canola oil
- 1/2 cup dark brown sugar
- 2 large eggs
- 1 teaspoon vanilla
- 1 cup vanilla-flavored Greek yogurt (plain Greek yogurt works great too!)
- 1 cup semi-sweet chocolate chips
Streusel:
- 2 tablespoons canola oil
- 1/3 cup dark brown sugar
- 1/2 cup old fashioned oats
- 1/3 cup semi-sweet chocolate chips
Instructions
- Preheat oven to 350°F. Lightly grease a 12-cup muffin pan with cooking spray and set aside.
- In a large bowl, whisk together the flour, oats, baking powder, baking soda, salt and cinnamon.
- In a medium bowl, whisk together the oil, brown sugar, eggs, vanilla and Greek yogurt. Stir the wet ingredients into the dry ingredients until well combined. Fold in 1 cup chocolate chips.
- Divide batter evenly among greased muffins cups, filling each one almost full.
- In a small bowl, stir together the struesel ingredients with a fork until well coated in the oil. Place a heaping tablespoon of streusel over the batter in the muffin cups.
- Bake for 15-18 minutes or until muffins start to turn golden brown and streusel is crisp. Let muffins cool in pan for 5-10 minutes before removing to a wire rack to cool completely or enjoy.














These have become my sons breakfast on the run when he is on his way to work. I make them weekly. He usually takes two and I thought that it would be better if I made these in a larger muffin tin so he only needed to take one. Just curious what the cook time would be? Do I need to change the temperature or just the time? Thank you very much for you help.
Hi Tasha! I love hearing how much your son enjoys these for breakfast each morning. My kids love them on the go too! I assume you’re wanting to bake them in a jumbo muffin pan? If so, I would recommend increasing the baking time by 5-7 minutes and checking them often towards the end. I’m thinking they’ll bake in about 25 minutes. I hope this helps and that y’all continue to enjoy!
Hi, by any chance do you have the nutrition facts for these muffins?
Hi, Sofia! I don’t provide nutritional information at this time because everyone uses different brands of ingredients. To find out, I would recommend plugging the ingredients you use into a free online recipe nutrition calculator like: https://whisk.com/recipe-nutrition-calculator/ Hope this helps. Enjoy! ❤️
Hey was wondering if you could use ap flour instead of whole wheat
Hi, Tanya! Absolutely! They won’t be as dense but they will still be delicious. Hope this helps!
Very delicious! I used coconut oil since I didn’t have canola.
Further, I improvised a bit with the crumble on top, as I had some left over cinnamon and sugar from a previous recipe. I just added oats and coconut oil and it was perfect.
Highly recommend this recipe. Not a lot of work but lots of flavour.
Hi, Kate! Thank you for sharing your adjustments! Super helpful. I am so happy you enjoyed the muffins and that a little effort went a long way!
Delicious and great for breakfast or a snack. Thank you for this recipe!!
I admit I was a little worried at how oatmeal-y the batter looked before baking, but they came out light and soft with a crunchy topping.
I used regular plain fatfree yoghurt and it worked with no issues too 🙂
Will definitely be using this recipe again!
Hi, Jasmine! It makes me so happy that you enjoyed them! The texture of these muffins is one of my faves. So glad you like it, too! Thank you for sharing.
can I use applesauce instead of oil? Thank you
Hi Cathy! Yes, you can definitely replace the 1/4 oil with 1/4 cup applesauce in this recipe. I would recommend using unsweetened applesauce so it doesn’t add more sweetness to the muffins. The overall texture will be slightly denser, but they should still bake up and taste great! Enjoy!
These were fantastically delicious muffins. My daughter doesn’t usually like oats so this was a great way to get her to eat oatmeal. I used half the sugar and half the chocolate chips (mini ones for better spread) and they were just right for breakfast. I plugged in the ingredients into a nutrition calculator and it showed almost 5 grams of protein which is great. I also used olive oil and plain Greek yogurt. I will make them again and again. Thank you!
Hi, Sarah! I am so happy that your daughter enjoyed them! I am so pleased. Thank you for sharing.
I love this recipe! I use it as a base and change the add-ins. I make bigger muffins that are great for eating on the way to work. They freeze well, too.
Hi, Mepowell! I love to hear how you’ve made them your own. Thank you for sharing!
can they be frozen?
Hi, Kerry! Yep! Just allow them to cool completely. Then wrap individually in plastic wrap and store in an airtight plastic container or bag in the freezer for up to 3 months.
Hi!
Can I make this into a loaf instead of muffins? Do you know what the bake time would be on this?
I never have luck with muffins not sticking so loaf pans are all I have.
Thanks!
Hi Meoshi! I haven’t tested the batter in loaf form, but I think it would bake up great. I would recommend using a 9×5-inch loaf pan and baking it at 350°F for about 60 minutes on the middle rack of your oven. I would rotate the loaf pan after 30 minutes and check every 10-15 minutes after that. If the top of the loaf starts to brown or crisp too much before the center is baked through, I would tint the loaf pan with foil and let it continue baking until a knife or cake testing stick inserted in the center comes out with moist crumbs. I hope this helps and that is bakes up great as a loaf. Enjoy!
Can I sub canola oil for butter or coconut oil?
Hi Natasha! Yes, melted butter or coconut oil would be great substitutes for the canola oil in this recipe, in both the muffin batter and the streusel. Enjoy!