Oatmeal Chocolate Chip Greek Yogurt Muffins made with whole wheat flour, oats and Greek yogurt in a healthier, hearty muffin that everyone will love!

A Muffin Obsession
My name is Maegan, and I’m obsessed with muffins! Banana muffins, chocolate chip muffins, blueberry muffins. ALL THE MUFFINS! They’re easy to bake, easy to serve, easy to eat and the varieties are endless. I can pretty much just open the fridge and pantry to find a few handy ingredients that would make tasty muffins in no time. And these Oatmeal Chocolate Chip Greek Yogurt Muffins are definitely worth obsessing over. They’re definitely one of my favorite muffin recipes. And they’re healthy-ish. That’s hard to beat!
Watch Me Make It!
Join me in the kitchen as I make these amazing Oatmeal Chocolate Chip Greek Yogurt Muffins!
Marvelous Muffins
We always have flavored or plain Greek yogurt on hand and I love baking with it because it adds great moisture and nutrition. I frequently use it in place of sour cream, mayonnaise, buttermilk and heavy cream in some recipes and you can hardly tell the difference. Today, I’m sharing a marvelous muffin that’s made healthier with whole wheat flour, oats, and a big cup full of Greek yogurt. They’ve got chocolate in them which makes them taste way more indulgent than they really are! I opt for semi-sweet chocolate, but dark chocolate chips would also be delicious.

Ingredients and Supplies
(see recipe card at the bottom of this post for measurements and details. To learn more about specific baking ingredients and how they function in baking recipes, reference my Complete Guide to Baking Ingredients)
Ingredients:
- Whole wheat flour: provides structure and fiber. Whole wheat flour adds a heartier texture and more nutritional value over all-purpose white flour. You can sub white whole wheat flour for a lighter texture.
- Old fashioned oats: add chewiness, nutty flavor, and a hearty texture to both the muffin and the streusel. They also help keep the muffins soft inside while crisping slightly on top. If you choose to use quick oats, keep in mind they have a softer texture and will cook more…quickly. So keep an eye on your oven and be ready to take your cookies out when they start to brown lightly at the edges.
- Baking powder: leavening agent that makes the muffins rise and stay fluffy.
- Baking soda: leavening agent that helps the muffins rise slightly and keeps them from being too dense.
- Kosher salt: balances the sweetness and sharpens the overall flavor. Table salt will actually pack a saltier punch than Kosher salt so if you only have table salt, adjust accordingly.
- Ground cinnamon: adds warmth and flavor that complements the banana and ginger so well.
- Canola oil: provides moisture and a soft texture with a neutral flavor that allows the other flavors to come through. Oil makes muffins more tender than melted butter.
- Dark brown sugar: adds moisture and chewiness due to the molasses content. If you use light brown sugar they won’t have as rich of a molasses flavor.
- Large eggs: bind ingredients, adds structure and aids in rising.
- Pure vanilla extract: enhances the overall flavor and brings out the warmth in the cinnamon.
- Vanilla flavored Greek yogurt: adds moisture, tang, and protein while helping with tenderness. You can use a whole milk or non-fat Greek yogurt. Plain Greek yogurt works great too!
- Chocolate chips: adds sweetness and a melty burst in both the muffin and the streusel. Use dark chocolate chips for a healthier antioxidant boost.
Supplies:

How to Make Oatmeal Chocolate Chip Greek Yogurt Muffins
- First, preheat oven to 350°F. Lightly grease a 12-cup muffin pan with cooking spray and set aside. Then, in a large bowl, whisk together the flour, oats, baking powder, baking soda, salt and cinnamon.
- In a medium bowl, whisk together the oil, brown sugar, eggs, vanilla extract and Greek yogurt. Stir the wet ingredients into the dry ingredients until the mixture is well combined. Fold in 1 cup chocolate chips.
- Divide batter evenly among greased muffin tins, filling each one almost full. In a small bowl, stir together the struesel ingredients with a fork until well coated in the oil.

- Place a heaping tablespoon of streusel over the batter in the muffin cups.

- Bake for 15-18 minutes or until muffins start to turn golden brown and streusel is crisp. Let muffins cool in pan for 5-10 minutes before removing to a wire rack to cool completely or enjoy.

Storage
Store leftovers in an airtight container at room temperature for up to three days or in the refrigerator for up to 5 days. Enjoy leftover banana muffins at room temperature or heat in the microwave for 10-15 seconds until warmed through.
To freeze, allow them to cool completely before wrapping individually in plastic wrap. Store in an airtight plastic container or plastic bag in the freezer for up to 3 months. Defrost frozen muffins in the refrigerator overnight or loosely covered at room temperature for a few hours.
More Muffins to Obsess Over
Naturally sweetened with maple syrup, these 5-Ingredient Flourless Banana Muffins are so delicious and moist, they’ll never miss what’s not in them. Flour-free, dairy-free and insanely tasty, you’ll feel great about serving them to your family! Make mornings magical with Blueberry Swirl Muffins that are tender with irresistible swirls of bold blueberry preserves all throughout. Mmmm-AZING! Nutella Swirled Banana Muffins are moist banana muffins with swirls of Nutella in every scrumptious bite!

More Marvelous Muffins
Sweet or savory, indulgent or healthy, discover your new favorite snack in my Marvelous Muffin Recipes!

If you make my Oatmeal Chocolate Chip Greek Yogurt Muffins, be sure to snap a picture and share it with me on Instagram @thebakermama so I can see. If you’re on Facebook, be sure to join my Friends of The BakerMama group to connect and share all the fun and yummy recipes of mine that you make! 😍 I just love seeing how inspired and creative y’all get with the ideas I share. Enjoy!
xoxo,

Oatmeal Chocolate Chip Greek Yogurt Muffins
- Prep Time: 15 mins
- Cook Time: 18 mins
- Total Time: 33 mins
- Yield: 12
- Category: Breakfast
Description
Oatmeal Chocolate Chip Greek Yogurt Muffins made with whole wheat flour, oats and Greek yogurt in a healthier hearty muffin that everyone will love!
Ingredients
Muffins:
- 1 cup whole wheat flour
- 1 and 1/2 cups old-fashioned oats
- 1 and 1/2 teaspoons baking powder
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 1 teaspoon cinnamon
- 1/4 cup canola oil
- 1/2 cup dark brown sugar
- 2 large eggs
- 1 teaspoon vanilla
- 1 cup vanilla-flavored Greek yogurt (plain Greek yogurt works great too!)
- 1 cup semi-sweet chocolate chips
Streusel:
- 2 tablespoons canola oil
- 1/3 cup dark brown sugar
- 1/2 cup old fashioned oats
- 1/3 cup semi-sweet chocolate chips
Instructions
- Preheat oven to 350°F. Lightly grease a 12-cup muffin pan with cooking spray and set aside.
- In a large bowl, whisk together the flour, oats, baking powder, baking soda, salt and cinnamon.
- In a medium bowl, whisk together the oil, brown sugar, eggs, vanilla and Greek yogurt. Stir the wet ingredients into the dry ingredients until well combined. Fold in 1 cup chocolate chips.
- Divide batter evenly among greased muffins cups, filling each one almost full.
- In a small bowl, stir together the struesel ingredients with a fork until well coated in the oil. Place a heaping tablespoon of streusel over the batter in the muffin cups.
- Bake for 15-18 minutes or until muffins start to turn golden brown and streusel is crisp. Let muffins cool in pan for 5-10 minutes before removing to a wire rack to cool completely or enjoy.














These turned out delicious. I used regular unsweetened Greek yogurt and half the recommended chocolate chips in this recipe, skipped the strudel and just added some sugar in the raw sprinkled on top to lessen the sugar in the overall recipe. Thanks so much for an awesome muffin recipe, I already ate 2!
Excellent muffin. Great flavor and texture, sweet enough for our taste. Will definitely be making again.
This recipe, as written, is more of a dessert as opposed to breakfast. The muffins are too sweet and have WAY too much chocolate. And I love chocolate. If I make again, I would reduce the chocolate by half and eliminate the streusel topping. It’s really not needed. Maybe just a sprinkle of turbinado sugar for sweetness and crunch. Otherwise, a unique recipe which I enjoyed as an after dinner treat!
Could I use oat flour instead of whole wheat? What amount would I use? What about agave syrup instead of brown sugar, I don’t like maple so…
I usually have AlmondMilk yogurt on hand, will that work too instead of Greek yogurt? Thank you
Hi! Yes, you can substitute oat flour cup for cup for the whole wheat flour. I would recommend substituting 6 tablespoons agave for the 1/2 cup brown sugar called for in the recipe. And yes, you can use almond milk yogurt in place of the greek yogurt. Enjoy!
I’ve made these several times and everyone loves them. Thank you!
Hi. I’d like to reduce the amount of oats in the batter to 3/4 cup. What can I replace it with?
More flour…equal amounts?
Thanks
Hi GG! Yes, you can replace the 3/4 cup oats with 3/4 cup whole wheat, all-purpose or oat flour. The overall texture of the muffins will be lighter, but they should still bake up great. Enjoy!
I love these muffins! They are so oaty and delicious. I usually do them without the topping and they turn out great everytime. A staple in our household – thank you!
Hello,
Can maple syrup be substituted for the brown sugar (in the muffins, not the streusel)? I got the idea from your healthy blueberry breakfast cupcakes. Thank you for the help! 🙂
Hi Ace! Yes, I would suggest you replace the 1/2 cup brown sugar called for in the recipe with just 1/3 cup maple syrup. There’s so much going on in the recipe already that the change in texture won’t be that noticeable. I would recommend still using brown sugar in the streusel. Hope this helps. Enjoy!
W O W, just wow. I absolutely LOVE these muffins. They smelled amazing when everything came together and it was love at first bite. I love taking them to work for an afternoon pick me up with my tea. This will definitely be a staple muffin recipe in my books. Thank you!!!
Can’t wait to make these but was wondering if I could use honey instead of sugar, if so how much honey would I need?
Hi Denise! Yes, you can definitely substitute honey for the brown sugar in the recipe. I would recommend 1/3 cup honey for the 1/2 cup brown sugar the recipe calls for. For the streusel, I would recommend 3 tablespoons honey for the 1/3 cup brown sugar it calls for. Hope this helps! Enjoy!